Hi everyone:

I've been trying to get an fst matrix using the smartpca package implemented in the eigensoft software, but although I do not get an error I only get an output file with the first column indicating all my individuals and the second with only the number 1 for every individual.

Here is a screenshot of my input parameter file.

http://s15.postimg.org/dupxukkh7/Screen_Shot_2013_10_28_at_1_07_25_PM.png

Thanks in advance.