There's no exact method. You have to look at the output file size and compare that against what you expect the final size to be. This is largely a guesstimate.
<p>HI, I got another question here, is it always necessary to find duplicates and remove them after <a href='http://bio-bwa.sourceforge.net/'>bWA</a> alignment whatever alignment is good or …
<p>My output of <a href='http://bio-bwa.sourceforge.net/'>BWA</a> index has only 4 files as </p> <p>mm10.fa.amb mm10.fa.ann mm10.fa.bwt mm10.fq.pac</p> <p>I read a thread that a guy's <a href='http://bio-bwa.sourceforge.net/'>BWA</a> …
<p>When I use new version <a href='http://bio-bwa.sourceforge.net/'>BWA</a> 0.7.5a to align my 78bp pair-end reads with reference genome under Linux, Index the genome and generate alignments …
<p>I am the first to install <a href='http://bio-bwa.sourceforge.net/'>BWA</a> and never use this software by commands of Linux.When I try to install <a href='http://bio-bwa.sourceforge.net/'>BWA</a> under <a …
<p>I want to switch from using <a href='http://bio-bwa.sourceforge.net/'>bwa</a> aln+sampe to <a href='http://bio-bwa.sourceforge.net/'>bwa</a>-mem, but I notice that there is no quality soft-trimming in the latter. (It …
<p>Hi,</p> <p>I tried running <a href='http://bio-bwa.sourceforge.net/'>BWA</a> in parallel by splitting the input FASTQ file into 'n' splits and ran single ended alignment (aln and samse …
<p>I'm trying to give the user of my program the option to run <strong>bwa aln</strong> or <strong>bwa bwasw</strong>.</p> <p>But from reading the <a href='http://bio-bwa.sourceforge.net/bwa.shtml'>documentation</a> I …