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Mapping Kegg Ids In Gostats

Hello everyone,

I am trying to adapt a script found on internet for using GOstats.

There is one line after a HyperG test was done that is :

goMaps <- lapply(out$GOBPID, function(x) unlist(mget(x, org.Gg.egGO2ALLEGS)))

That's for Mapping GO IDs, what shall I use instead of org.Gg.egGO2ALLEGS for mapping KEGG IDs ?

Thank you

mapping kegg gene identifiers r
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updated by Lars Juhl Jensen Lars Juhl Jensen • written by Radhouane Aniba Radhouane Aniba

1 answer

All right found it

keggMaps <- lapply(outK$KEGGID, function(x) unlist(mget(x, org.Gg.egPATH2EG)))
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updated by Ram Ram • written by Radhouane Aniba Radhouane Aniba

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