[Perl] Parser Table Names
Hello Guys,
I have a table where the fields are separated by tabs. In the second column I have the names of the files that are in the directory. How do I process a pipeline taking the name of a file at a time using PERL?
E.g.,
AAA01 aaa01.fasta
AAA02 aaa02.fasta
Thanks
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1 answer
Correction (model table):
AAA01 \t aaa01.fasta \n (enter) AAA02 \t aaa02.fasta
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And how is your question bioinformatics related?
You can try to ask at stackoverflow ("site for professional and enthusiast programmers" as biostar's "focus is bioinformatics, computational genomics and biological data analysis. ").
I agree, as it stands this is more a basic Perl programming question than a bioinformatics problem. Don't ask at StackOverflow though, because you will get roasted :)
You need to learn some basics of Perl programming: namely, how to (1) open a file for reading, (2) step through one line at a time, (3) split lines on a delimiter (tab in this case) and (4) access array elements (since splitting will generate an array with your file name in the second element).
Hello countcorvus!
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Really old question that's not really bioinformatics.
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