Hi, I know that it is possible to get the coordinates about CpG islands in the genome at UCSC (https://genome.ucsc.edu/cgi-bin/hgTables), but some islands only have …

Hi all! Is anyone aware of available **sample-level** differential expression from TCGA? I am trying cBioPortal, but for a reason the patient IDs I am …

1. I want compute survival analysis between LncRNA and Breast Cancer based on TCGA. but i don't know how get the LncRNA information. 2.Should I …

<p>Hi,</p> <p>I am currently working on survival analysis for LUAD dataset from TCGA. I have used TCGA-Assembler to download clinical data successfully. However, I have …

<p>Does anyone know how to convert MEDIP-seq RMS(raw methylation score) values into AMS? I looked into MEDIPS package but the documentation isn&#39;t clear on how …

<p>Does anyone know where I can download copy number data (amplification/deletion) along with the Patient IDs? </p> <p>I have tried using <a href='http://gdac.broadinstitute.org/runs/'>http://gdac.broadinstitute.org/runs/</a> but the …

<p>Does anyone have any idea how can get GISTIC or RAE data files for copy number variance from either TCGA or CBioPortal? I want to …

<p>Does anyone know where to download gistic_amp_file or gistic_del_file as well as the case_file from CBioPortal or TCGA?</p> <p>Thank you!</p>

<p>Hi!</p> <p>I have received three plink files: *bed, *bim, and *fam, from which I need to extract two columns of data in a human readable …

<p>Is there anyway to download the mutation data for a gene on CBioPortal at once? I mean as opposed to selecting each tissue type one …