Why Posting Data To Plantcare With Urllib,Urllib2 In Python Returns 'Http Error 400: Bad Request'

I was tring to write a python script to get data from PlantCARE. But It alway return 'HTTP Error 400: Bad Request'. urllib and urllib2 works fine with other websites.

Here're the codes.

import urllib2, urllib
url="http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/CallMat_IE55.htpl"
params={
    'Field_Sequence':'CTAATCTTATGCATTTAGCAGTACAAATTCAAAAATTTCCCATTTTTATTCATGAATCATACCATTATATATTAACTAAATCCAAGGTAAAAAAAAGGTATGAAAGCTCTATAGTAAGTAAAATATAAATTCCCCATAAGGAAAGGGCCAAGTCCACCAGGCAAGTAAAATGAGCAAGCACCACTCCACCATCACACAATTTCACTCATAGATAACGATAAGATTCATGGAATTATCTTCCACGTGGCATTATTCCAGCGGTTCAAGCCGATAAGGGTCTCAACACCTCTCCTTAGGCCTTTGTGGCCGTTACCAAGTAAAATTAACCTCACACATATCCACACTCAAAATCCAACGGTGTAGATCCTAGTCCACTTGAATCTCATGTATCCTAGACCCTCCGATCACTCCAAAGCTTGTTCTCATTGTTGTTATCATTATATATAGATGACCAAAGCACTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAA',
    'Field_SequenceName':'demo',
    'Field_SequenceDate':'4.27',
    'Mode':'readonly',
    'StartAt':'0',
    'NbRecs':'10',
    'MatInspector':'Search'
    }
data=urllib.urlencode(params)
print urllib2.urlopen(url, data).read()

But I can get the result page directly with curl. It's wierd! Open this link in any browser should be the same ,and it works fine.

curl "http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/CallMat_IE55.htpl?Mode=readonly&StartAt=0&Field_Sequence=CTAATCTTATGCATTTAGCAGTACAAATTCAAAAATTTCCCATTTTTATTCATGAATCATACCATTATATATTAACTAAATCCAAGGTAAAAAAAAGGTATGAAAGCTCTATAGTAAGTAAAATATAAATTCCCCATAAGGAAAGGGCCAAGTCCACCAGGCAAGTAAAATGAGCAAGCACCACTCCACCATCACACAATTTCACTCATAGATAACGATAAGATTCATGGAATTATCTTCCACGTGGCATTATTCCAGCGGTTCAAGCCGATAAGGGTCTCAACACCTCTCCTTAGGCCTTTGTGGCCGTTACCAAGTAAAATTAACCTCACACATATCCACACTCAAAATCCAACGGTGTAGATCCTAGTCCACTTGAATCTCATGTATCCTAGACCCTCCGATCACTCCAAAGCTTGTTCTCATTGTTGTTATCATTATATATAGATGACCAAAGCACTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAA&Field_SequenceName=Sequence+test&Field_SequenceDate=4.27&NbRecs=10&MatInspector=Search"

python

• 8,890 views • link

updated 12.8 years ago by Biostar

• written 15.3 years ago by Gahoo

1 answer

It seems that the Accept header is needed, but I don't know why.

Making the following changes to your code seems to work for me:

data = urllib.urlencode(params)
headers = {"Accept" : "*/*"}
req = urllib2.Request(url, data, headers)
print urllib2.urlopen(req).read()

• 0 views • link

written 15.3 years ago by Bio_X2Y

Thanks a lot, it's working now! I capture the package sent by firefox4 with WireShark. The Accpet header is below:

Accept: text/html,application/xhtml+xml,application/xml;q=0.9,/;q=0.8

Would it be helpful to find out the reason?

• 0 views • link

written 15.3 years ago by Gahoo

I wouldn't worry about the reason too much, most likely a server setup that tries to ward off certain type of requests, props to Bio_X2Y for finding it out though - an error like this would that would have stumped me too for ages

• 0 views • link

written 15.3 years ago by Istvan Albert