In PDB files, the header lists the beta **sheets** and then the **strands** in those sheets. I prefer to detect beta strands with the STRIDE …

<p>HI,</p> <p>I have a MSA of homologous sequences of beta-turn for which I have calculated the turn type (I'/II'/I/II). Now to quantify in terms of …

<p>Hi,</p> <p>I want to know what exactly are the N-cap of C-cap residues in a beta-hairpins. Actually I found a paper about this, but I …

<p>Hi,</p> <p>I have the frequencies of binary patterns of polar and non-polar residues in strands of anti-parallel beta-hairpins from 5 different sets of anti-parallel beta-hairpins. …

<p>HI,</p> <p>I have created a data-set f non-homologous protein sequences from PDB in order to study certain secondary structures. After that, I obtained a list …

<p>Hi,</p> <p>I have a data-set of hon-homologous protein structures. Now I want to find evolutionary conservation of protein folds amongst those structures in the data …

<p>Hi,</p> <p>I have a list of pdb structures for which I have to find the fold and class. I used the parseable files from SCOP …

<p>Hi,</p> <p>I want to include the % of query coverage in my standalone blast result. Can anyone help me with this ??</p> <p>Regards</p> <p>BHARAT</p>

<p>Hi,</p> <p>I am trying to calculate the propensity of amino acids in the beta-strands of my data-set. The problem with my data-set is that strands …

<p>I know the 3D coordinates of an atom. I want to find out it's non-bonded atoms within a specific distance.</p> <p>Rishika Sengupta Research Engineer CARL …