Automated Snp Lookup Based On Chr And Bp-Position

I have a list of chr and positions for SNPs but I don't have there RS id #

I know how to look up the information manually at NCBI, but is there someway to automate this process?

ncbi snp snps

• 5,125 views • link

updated 5.6 years ago by Biostar

• written 13.2 years ago by bdeonovic

1 answer

There are a bunch of solutions to your problem here: Get rs number based on position

• 104 views • link

written 13.2 years ago by Robert Sicko

More posts like this

how to select SNPs at regular intervals based on their physical positions?
written 5.0 years ago by blacktomato27

Hi to all Good Afternoon I have SNPs table with SNPs their chromosome number and their physical positions. Now i would like to select one …
Is there a package that outputs gene coordinates given a list of Ensembl IDs?
written 5.6 years ago by R.T. Canterbury •

I need the gene coordinates (CHR, START, END) for a list of genes. I have the Ensembl IDs, but I have over 200 genes. I …
Issues with identifying chromosomes for a list of SNPs
written 5.8 years ago by ks.sholohova •

Hello everyone! *Today I was trying to check whether all SNPs in my list (thousands of SNPs, GRCh37) belong to the particular chromosome (let's say …
how to correct chromosome number and variant position in a VCF file by the rs#?
written 9.3 years ago by miaowzai

I have a VCF file that contains some variants with wrong chromosome numbers and wrong positions. For example: #CHROM POS ID REF ALT 0 0 …
Haplotypes for cyp450
written 9.7 years ago by paulo •

Hi there I am using a custom plate and Illumina to genotyping the snps from cyps450. I had to biulding all haplotypes by hand. There …
Clinically Relevant Snps In The Neighborhood Of Gwas Signal
written 12.5 years ago by jeffrey.mitchel •

I'm a grad student wrapping up a GWAS study (first one I've ever been involved in) and I have a handful of interesting signals. However, …
How To Find Go Numbers Given A Protein Coding Sequence?
written 13.0 years ago by burkhart.joshua •

I have a large collection of protein coding sequences and I'd like to find GO numbers for them in order to categorize them by function. …
Why Can'T I Find Certain Snp Names In Dbsnp?
written 13.2 years ago by bdeonovic

We did some DNA sequencing and then did some GWAS analysis (using PLINK). Some of the SNPs in the MAP file look like: <pre><code>exm1166050 exm984699 …
How Can I Obtain All Snp Rs#?
written 13.8 years ago by J.F.Jiang

Hi all, I want to obtain a set of all 1000G snps, without genotypes, but some basic information such as chr, pos.,alles and rs# Should …
Mapping Snps To Genes (And Pathways, Go, Etc.)
written 15.1 years ago by Stephen

I'm trying to build a database that will link SNPs (via rs-IDs) to genes with their respective Ensembl ID, Entrez/NCBI ID, and HUGO gene name …