SplitsTree doesn't really do what I want (or I haven't managed to find how to do it). Essentially, I want to do a split support spectrum for the data as in Fig. 2 of the SAMS paper.
Unix/Linux/Macos X Software For Visualizing A Split Support Spectrum For An Alignment
2 answers
I'm not quite sure but its possible that SplitsTree is what you're looking for. It has a lot of options, is written in Java (for OSX, Linux, Windows), and works fine on Macs. I'm glad you linked to Spectrum, I haven't used that in years, what a great programme that was, I feel all nostalgic!
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