Hi, we are defining new pipelines for processing our data. We are testing the pipelines using 1000 Genomes data.

We are looking for samples with a high coverage, almost 70% of exome targets with at least 20x and more than 3x coverage that had also been processed with the Affy 6.

We have crossmatched the samples found in 1KG's spreadsheet and the VCF for 1KG data of Affy 6 but it only resulted in nothing when filtering for high coverage. When we used all samples we obtained only:

PEL    SRS191060    HG01982    PEL28    male    father    trio    BGI    BGI    0    0    0    0
PEL    SRS191061    HG01983    PEL28    female    mother    trio    BGI    BGI    0    0    0    0
ACB    SRS212510    HG02537    BB61    female        unrel    BCM    BCM    0    0    0    0

Are we looking to the wrong file? Where can we find bam and vcf files of the individuals with Affy 6 data?

Bonus question: Is there any trio finished with all three individuals sequenced at high coverage? If not, someone knows when this would happen?