Hi, I've a bed file containing several region of interest and I want to pick randomly N positions in these regions. I know that "bedtools …

<p>Hi,</p> <p>I've several genomic interval and I want to check if they are overlapping with known gene. I've a gtf file with the coordinates of …

<p>Hi,</p> <p>I've a bunch of RNA sequence to check for known local secondary structures, and also to check for enriched local secondary structure between them. …

<p>Hi,</p> <p>I've smallRNA-seq data and want to count the number of read for each miRNA. I'm studying samples from a non-well annotated species so I've …

<p>Hi,</p> <p>How can I check for very high coverage region in a <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> file. I've several samples with good alignment rate (~90%) but when …

<p>Hi,</p> <p>To analyze newly discovered transcript (like lncRNAs), I want to check if the structure of interesting RNA candidates are similar to known RNAs, and …

<p>Hi,</p> <p>Do someone know tools to predict protein-protein interaction. I've a novel putative protein sequence and I want to know there is a chance that …

<p>Hi to all I want to draw tRNA cloverleaf model structure. Is there a tool to draw it? If not so how to draw it? …

Hi, Is there a tool to draw the read coverage on a secondary structure? Thanks

<p>Hi,</p> <p>Is there a tool to pertub a secondary structure of a RNA by permutating its nucleotide sequence. In my case, I've a sequence encoding …