Config File For Running Small Files On Soapdenovo. · Biostar

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Config File For Running Small Files On Soapdenovo.

I have a single, small RNA-seq file from bacteria (~2 millions reads). it is actually my unaligned file of SOAPaligner that I got after getting rid of Macrophage RNA contamination. I want to use this single file for denovo transcriptome assembly in SOAPdenovo. How can I make my config file in this case.

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updated 11.2 years ago by Biostar

• written 13.5 years ago by joaslucas •

1 answer

There is an example config file in the manual, and at the bottom of the SOAPdenovo-Trans webpage. You can modify that file based on your data and it should work fine.

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written 13.5 years ago by SES

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