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Looking For Test Bam File That Contains Variants And Multiple Forms Of Structural Arrangements

I am trying to validate some new methods and I am looking for good BAM file(s). I know I could simulate them myself, but I was wondering someone has already done this and spent the time to document their work.

It would be nice if the bam file(s) contained the following:

1) Multiple sequence IDs.

2) Variants.

3) All forms of structural rearrangements.

4) The more documentation the better.

5) Small.

I would be very grateful if someone was willing to share!

bam
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updated by Istvan Albert Istvan Albert • written by Zev.Kronenberg Zev.Kronenberg

added some extra description into the title so that later it is easier to identify what the question is about.

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written by Istvan Albert Istvan Albert

don't let anyone pass off TCGA as some kind of solution since it seems the barriers to access are ridiculously high

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written by Jeremy Leipzig Jeremy Leipzig

1 answer

Here is what I have found so far: https://github.com/arq5x/lumpy-sv/tree/master/data

Still looking for more.

• 74 views • link
written by Zev.Kronenberg Zev.Kronenberg

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