Hi,
I am looking for these previous posts on Biostar, but couldn't find them,
Mainly I am interested to know what are the tools /ways I can annotate a SNP in intron to see whether the SNP has some functional implication on host gene function etc.. Please share your thoughts.
Thanks,
Indrani
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indranipoddar •
The links are incorrect, you have extra numbers at the end, they should be:
I have considered allowing the longer but incorrect forms to go through unfortunately that is a slippery slope because then it may allow other badly formed urls and only confuses the search engines that do not know anymore which one is the correct url
It looks like your missing posts are here Investigating Snps Of Unknown Significance (Uv) and here Synonymous Snps Not So Synonymous At All FYI - you could find these just by searching for the titles of the old posts in case this happens to you again.
Lately I have been testing out Ingenuity Variant Analysis which seems to be doing a good job of prioritizing variants in non-coding regions if you choose the right filters. But, not sure if you (or we) can afford to use this system outside of a context of the free trial period or promotional pilot programs. I think their pricing model is still TBD.
Thank you all for all your reply. I will go through these posts. Indrani
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