Structures Of Cyclodextrin Complexed With Small Ligands · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

Structures Of Cyclodextrin Complexed With Small Ligands

For some structural study I am looking for cyclodextrin strucutures (in 3D format such as pdb, mol2, etc) complexed with small molecule ligands, such as cholesterol and even smaller. Right now I could only find on the PDB database some proteins complexed with cyclodextrin, but no structure of cyclodextrin with small ligands, could you help me?

structure protein

• 2,857 views • link

updated 13.7 years ago by quentin.delettre

• written 13.7 years ago by Flow

1 answer

If you didn't find what you are searching for in the PDB, then maybe it is not available/made yet.

• 0 views • link

written 13.7 years ago by quentin.delettre

I finally wrote to some of the authors of the papers mentioned above and they sent some structures tome!

• 0 views • link

written 13.7 years ago by Flow

Log in to answer this question.

More posts like this

Fetch best fitted ligand from PDB
written 2.8 years ago by yhdist •

Hi all, I have been trying to fetch different types of data from the PDB for a data structuration project recently. However, I've stumbled upon …
Database Or Repository Containing All Protein Structures From Pdb In Docking Ready Format (Pdb, Mol…
written 12.8 years ago by Flow

<p>I have some ligand structures and I would like to which proteins it could interact to. For that I would like to use docking, and …
Get Protein Monomers In An Automated Way
written 13.5 years ago by Flow

<p>For a given set of protein structures in pdb format from the PDB database, I would like to find some automated way for checking whether …
State Of The Art Of Prediction Of Protein Functionality After Ligand Binding
written 13.9 years ago by Flow

<p>Current Virtual Screening methods (Docking, Pharmacophore, etc) can screen a large database of chemical compounds and rank them according to some computed score value. Usually …
Save Union Of Protein Plus Ligand As A Pdb-Like Molecule
written 14.2 years ago by Flow

<p>I have a PDB of some protein (without ligand), converted to mol2 format, and a mol2 file of a ligand. I would like to have …
Study Folding And/Or Molecular Dynamics Of Just A Flexible Part Of A Protein
written 14.8 years ago by Flow

<p>In some PDB protein structure I would like to study flexibility in some concrete part of the molecule (small loop). I would like to perform</p> …
Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
written 14.8 years ago by Flow

<p>I am working with some protein that has 6 polar basic residues on its binding site. I would like to find similar proteins on PDB …
Affinity Data For Inverse Docking Tests
written 15.1 years ago by Flow

<p>We want to measure the selectivity of some docking program recently (supposed to have been) improved. It can reproduce rather well binding modes for most …
Split Database Of Mol2 Files Into Chunks Of N Files
written 15.2 years ago by Flow

<p>I downloaded portions of ZINC database in mol2 format. Each part contains 20000 ligands. I would like to split each one into 100 ligands chunks. …
Given Several Compound Reference Numbers, How To Get The Molecular Files
written 15.2 years ago by Flow

<p>I have a list of chemical compounds from several vendors, like sigma aldrich, for them I have the reference number, for example N5023 for sigma …