Extracting Microarray Data From Gse 'Object' Using Geoquery
Hi.
I'm trying to use GEOquery to extract data from a GSE file I downloaded but I'm not having any joy.
Can someone tell me what commands to use?
thanks and sorry if this is covered else where.
Chros
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Sean Davis
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cjmcdermottroe •
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cjmcdermottroe •
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I'm guessing this isn't a GEOquery question, really. Assuming you are doing something like:
library(GEOquery)
gseList = getGEO('GSE2553')
gse = gseList[[1]]
Now, gse is an ExpressionSet. See the help for ExpressionSet-class (in the Biobase package) to learn how to use these objects. If this doesn't answer your question, please provide more detail in your question.
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It's covered in the GEOquery manual. And it helps if you describe, precisely, what you are trying to do.