Drawing Dssp File

Hi, I have a DSSP file CCCCHHEECCC............. I'd like to draw it. Do you know any program?

Thank in advance

secondary software visualization

• 4,433 views • link

updated 5.7 years ago by Jiyao Wang •

• written 15.5 years ago by Elisa •

2 answers

The first Google hit for "DSSP graphics" suggests ESPript for this purpose. It also has a web interface.

• 1 views • link

written 15.5 years ago by Neilfws

It's actually quite simple. You can generate an html like the following:

<html>
<link rel="stylesheet" href="https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d_full_ui_2.22.0.css">
<body>
<div class="icn3d-dl_sequence" style="font-size: 0;">

  <span class="icn3d-coil">&nbsp;</span>
  <span class="icn3d-coil">&nbsp;</span>
  <span class="icn3d-helix">&nbsp;</span>
  <span class="icn3d-helix2">&nbsp;</span>
  <span class="icn3d-helix">&nbsp;</span>
  <span class="icn3d-helix2">&nbsp;</span>
  <span class="icn3d-helix">&nbsp;</span>
  <span class="icn3d-helix2">&nbsp;</span>
  <span class="icn3d-coil">&nbsp;</span>
  <span class="icn3d-coil">&nbsp;</span>
  <span class="icn3d-sheet">&nbsp;</span>
  <span class="icn3d-sheet">&nbsp;</span>
  <span class="icn3d-sheet">&nbsp;</span>
  <span class="icn3d-sheet">&nbsp;</span>
  <span class="icn3d-sheet">&nbsp;</span>
  <span class="icn3d-sheet2">&nbsp;</span>

</div>

</body>
</html>

• 0 views • link

written 5.7 years ago by Jiyao Wang •

More posts like this

How to modify Chromosome names in genome fasta file
written 3.8 years ago by Elisa •

Hi everyone, I'd like to know how to modify chromosome names in my genome fasta file. Specifically, I'd like to substitute: chr1_1-hap-1 chr2_1-hap-1 ... chrX_1-hap-1 …
variant calling
written 5.1 years ago by Elisa •

Hi everyone, I must perform somatic variant calling on ovarian samples (targeted sequencing performed with Illumina). I do not have the control match; it is …
somatic variant calling
written 5.1 years ago by Elisa •

Hi everyone, I'm dealing with a targeted genome sequencing on ovarian tumor samples. I'd like to know which tool should I use to perform variant …
DSSP does not match PDB header
written 9.4 years ago by lorenzo.fabbri •

Hi all. Looking at the DSSP of a protein, I noticed that it does not match the information in the header of the PDB file. …
Programm/tool for drawing promoter motif image
written 10.5 years ago by teresa.noviello89 •

Hi. I have a list of putative TF binding site on the promoter of a studied gene. I have both the start-end and the sequence …
Jbrowse: importance of draw-basepair-track.pl
written 11.6 years ago by CikLa

Hi, I found a script named `draw-basepair-track.pl` in JBrowse program. May I know, what is that actually? Why do people want to draw the basepair …
Forward simulation with SNP data
written 11.8 years ago by Fotis T •

Hi, I want to simulate migration events, mutations and recombinations on real snp data, by forward simulation. I am not aware of a program that …
Imput files from Refseq database in the program seqret [Emboss]
written 11.9 years ago by JorgeGonzalez •

Hi I'd like know how I can imput file from Refseq database in the program SEQRET [Emboss], I need imput refseq:NM_004348 file, But there isn't …
Drawing Protein Picture
written 15.4 years ago by Elisa •

Dear all I often find protein's image like this <img src="http://turing.cs.iastate.edu/EnsembleGly/glc.bmp" alt="alt text"/> Do you know if exixt a program to draw them (I mean …
Invariant Points
written 16.0 years ago by Hazelin •

Hi all!! I would like to know how do I get the invariant points of 2 PDB structures because i need to superimpose them and …