Meandp In Vcftools

Could someone help me to understand what is the meaning of following options for vcftools? how to choose the values for them when selecting sites?

--minQ --min-meanDP --maf --hwe --geno

I am quite new in this filed, thanks a lot for helping!

vcftools

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updated 15.5 years ago by Istvan Albert

• written 15.5 years ago by Yuliu •

Mailing Lists for vcftools - http://sourceforge.net/mail/?group_id=279407 , please consult with them

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written 15.4 years ago by Thaman

1 answer

Please consult the vcftools documentation located at:

http://vcftools.sourceforge.net/options.html

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written 15.5 years ago by Istvan Albert

not enough info there.

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written 15.5 years ago by Yuliu •

Istan means to consult the developer@ vcftools-spec@lists.sourceforge.net.

• 0 views • link

written 15.4 years ago by Thaman

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