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Adding Missing Atoms To Pdb

Which program can i use to complete the structure of a pdb with missing atoms?, i looked several tools online like PDB2PDR, and what i found some are commercial tools, but all i want to do is to complete it.

Thanks

pdb structure protein
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updated by ashutosh.gupta • ashutosh.gupta • written by Raygozak Raygozak

4 answers

Try to model them using modeller or other modelling tools: Missing residues: demonstrates using Modeller to fill in missing residues.

ProtCID Adding missing residues to protein structure file.

http://salilab.org/modeller/wiki/Missing%20residues

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written by Rm Rm

Thanks, i was confused because they said adding missing residues, i was interpreting as residues=aminoacids, but seems i was wrong.

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written by Raygozak Raygozak

I usually use MaxSprout with DeepView . Also check a detailed discussion on same topic here

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written by Khader Shameer Khader Shameer

Anyone who is having the same problem, Please use http://lorentz.dynstr.pasteur.fr

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written by dasdevashishdas dasdevashishdas

Check this out. It is very useful and working. https://github.com/ashutoshcipher/Add-missing-Residues-to-PDB-files

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written by ashutosh.gupta • ashutosh.gupta

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