This manual is intended for users who have a basic knowledge of the R environment, and would like to use R/Bioconductor to perform general or HT sequencing analysis. For new users, it is recommended to first review the material covered in the "R Basics" section. To obtain a more comprehensive overview of R's sequence bioinformatics utilities, Robert Gentleman's book "R Programming for Bioinformatics" is an excellent choice.

See more at: http://manuals.bioinformatics.ucr.edu/home/ht-seq