Gene names from gene ID
I'm aligning my sequence to the Acinetobacter baumanii genome and when I look at the gtf file for the species, I get the following types of lines:
NZ_CP009257.1 RefSeq CDS 284 558 . - 0 transcript_id "gene-IX87_RS00010"; gene_id "gene-IX87_RS00010"; gene_name "IX87_RS00010";
The issue is that I don't know how to figure out what the gene "IX87_RS00010" is. I tried to google the gene and didn't get anything. Does anybody know how I can figure out the gene based on this ID and what the gene does? I suppose there should be something on NCBI?
Thanks!
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1 answer
Using Entrezdirect:
Looks like this record is discontinued.
$ esearch -db gene -query "IX87_RS00010" | efetch
1. IX87_RS00010
[Acinetobacter baumannii]
Other Aliases: IX87_RS00010
This record was discontinued.
ID: 31347136
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