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Cytoscape - how do I change the node size relative to number of edges?

I have created a network on Cytoscape, but I am trying to find something that will allow me to change the size of my node based on the number of edges. I have looked online and I see people recommending VizMapper, but it seems to be outdated. Is there something similar that can be used with the latest version of Cytoscape?

Thanks in advance

cytoscape software-error
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updated by Ram Ram • written by gemmalouisebaldock • gemmalouisebaldock

1 answer

In Cytoscape, with your network loaded try Tools > Analyze Network menu option. After invocation there will be a new column in the node table named "Degree." The "Degree" is the number edges connected to each node and a style can be added to use that column to set the size of the node. For information on how to style nodes see: http://manual.cytoscape.org/en/stable/Styles.html#introduction-to-the-style-interface

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written by churas.camera • churas.camera

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