WGCN visualize one module
Hi, I have successfully performed WGCNA. I have also visualized the whole network using igraph. Now I want to visualize one specific module and highlight sig. DE genes that are assigned to the module. How can I do that?
• 1,373 views
•
link
updated
by
desilvakithmee •
•
written
by
anakurdadze0 •
•
written
by
anakurdadze0 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
WGCNA
written by mavy •
-
WGCNA hub genes VS. DEG
written by Penny •
-
Nearest neighbors from a determinate gene in the module
written by cardon.chc •
-
Network Analysis - how to generate the edges and vertices dataset?
written by pinheirofabiano •
-
WGCNA (TRAIT DATA)
written by Rishabh •
-
volcano plot in R
written by parinv •
-
DissTOM and Cytoscape - WGCNA
written by Silvia Gonzalez •
-
Network Visualization WGCNA
written by Silvia Gonzalez •
-
constructing network by WGCNA and validation Hub genes
written by modarzi
-
Exporting WGCNA step-to-step network construction objects into igraph object
written by modarzi
You can export the network modules to text files using
exportNetworkToCytoscapefunction in WGCNA (each module will be saved separately). Then import the file to Cytoscape and visualize each module and highlight the genes as you want.