Graphic of expression on BrainSeq, what is on Y?

I dont understand what units are on Y scale. Expression cannot be negative, does it? What units shows Y then? https://ibb.co/KKfSZnV
snp
• 725 views
•
link
updated
by
i.sudbery
2.3K
• |
written
by
philosophical.raptor111
0
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Gene locus and gene ID
written by zizigolu 438Hi as in the picture I have a long non coding RNA `ENSG00000260958 (LOC105371200)`, when I search for that I got this My question is …
-
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
written by ojaswinipandey 00 I am following the tutorial https://scanpy.readthedocs.io/en/stable/tutorials/basics/clustering-2017.html for learning purposes. In the Scree/Elbow plot made in the tutorial - (https://i.sstatic.net/lQxpQyA9.png) What is represented on the …
-
Interpreting results of a dotplot
written by pablo 35Hello, I have an assembly with a size 1.9Gb . I expected a genome with a size around 1.1Gb. I supposed the excess is caused …
-
Problem with gene names in tximport
written by dioscorea.bulbifera 1I am trying to import quant.sf files output from salmon into R using tximport and a transcript to gene (tx2g) file from BUSpaRse:tr2g_ensembl(). The transcriptID's …
-
Tutorial: A simple tutorial for a complex ComplexHeatmap
written by Kevin Blighe 9.0KThis is being added in response to my message on Twitter and LinkedIn about *ComplexHeatmap*. The new message is [here][1]. Many folks seemed interested in …
-
[IGV] Is it an aneuploidy ?
written by slfksdjfsdls 0![enter image description here][1] ![enter image description here][2] [1]: https://i.ibb.co/q7fwrgN/Capture1.png [2]: https://i.ibb.co/nknF1dY/Capture2.png It is marked "first in pair" and "second in pair" depending on the …
-
what is the definition of "cell barcode collapsing"
written by yueli7 25Hello, What is the meaning of the following figure? Summay plot of cell barcode collapsing. Plot the original frequency of each cell barcode in the …
-
Arraystar Human CircRNA microarray V2 annotation
written by Barry Digby 135Hey all, I have downloaded raw data from [GSE118959][1]. The platform used for this study was '074301 Arraystar Human CircRNA microarray V2 -- Agilent Technologies'. …
-
mummer dot plot
written by David 24Hello, I have aligned two complete bacterial genomes using mummer (1 contig per genome) I´m not sure i understand well the output. Here is the …
-
any idea about histogram(graphic) clustering?
written by boaty 24hi guys, I generated more than 10000 transcript coverage histogram and i want to separate them into 2 different categories . group 1, there is …
The BrainSeq website doesn't provide enough information to tell, you'd have to read the paper. My guess would be either log TPM or log FPKM, which can be negative if the TPM or FPKM is less than 1.