How to calculate dN/dS for all ortholog group ? · Biostar

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How to calculate dN/dS for all ortholog group ?

Hi all,

I have managed to generate json file for all ortholog groups (4000) under HyPhy using BUSTED, SLAC and FEL. From the output, how can i find the dN/dS and how shall i compare among all of the groups ? In addition, what other information can i retrieve from this output ? Do enlighten me in this issue.

Thank you.

slac dn-ds hyphy fel

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updated 3.4 years ago by Ram

• written 5.5 years ago by sadstudent •

I use codeml on neutral model but it is really non trivial

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written 5.5 years ago by lagartija

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