Dear Biostars community i trust this will find you well and safe in these hard times. i am running an assembly on some 10X chromium Data the run goes well for 2 days then stops with the following error message R
unning onfinish handler...
[error] Pipestance failed. Please see log at:
AssemblyMagellan10x3/ASSEMBLER_CS/_ASSEMBLER/_ASM_SN/MSP/fork0/chnk01-u7ab61b1d7e/_errors
Waiting 6 seconds for UI to do final refresh.
Pipestance failed. Use --noexit option to keep UI running after failure.
/home/meksem/supernova-2.1.1/supernova-cs/2.1.1/tenkit/bin/sitecheck: line 24: echo: write error: No space left on device
find: Failed to write output (at stage 900): No space left on device
find: write error
Saving pipestance info to AssemblyMagellan10x3/AssemblyMagellan10x3.mri.tgz
gzip: stdout: No space left on device
tar: AssemblyMagellan10x3.mri.tgz: Cannot write: Broken pipe
tar: Child returned status 1
tar: Error is not recoverable: exiting now
i ll be grateful if anyone can help with this matter meanwhile i am checking my Disk repartitions to see if i can fix the problem thank you very much oussama
2 answers
find: Failed to write output (at stage 900): No space left on device
find: write error
I believe it is clear. You run out of space in your discs. This could be due to your discs have few space left or you have a low amount of RAM memory and the program could be using the disc space as virtual space to write a huge amount of data
Solutions comes from using a bigger disc and/or installing more RAM memory
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@GenoMAx and @Antonio thank you very much, indeed the run was on the wrong partition thank you for your prompt reply