how to use EUPAN whith assembled genomes
hello dear friends i hope you are doing well I want to perform a pan genome analysis using EUPAN toolkits. in the EUPAN toolkits manual i found the data to be fastq files i.e. files which contain reads. but in my case I downloaded genomes already assembled (drafft genomes). how can I use EUPAN with genomes already assembled? can someone help me please? and thank you in advance.
• 795 views
•
link
updated
by
Biostar
•
written
by
hafida.bioinfo.125 •
•
written
by
hafida.bioinfo.125 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
pan genome analysis
written by hafida.bioinfo.125 •
-
Orthocml
written by hafida.bioinfo.125 •
-
pan genome analysis
written by hafida.bioinfo.125 •
-
Conversion of fna files to faa
written by Sharon •
-
Does GISAID fasta files contain spike protein or whole genome sequence?
written by er.alruba2017 •
-
EUPAN Toolkits error
written by hafida.bioinfo.125 •
-
Question: perl warning message
written by hafida.bioinfo.125 •
-
Operon Prediction for prokaryotes
written by ARich
-
how many genomes from BLAST hit should be considered for phylogeny tree analysis?
written by DanielC
-
Alternatives to Gene Set Enrichment Analysis dedicated for single samples
written by orzech_mag
If a program requires a certain kind of input then that is a requirement. Not sure what EUPAN does but if you don't have the right kind of input you will need to find a different program. You could generate fake fastq reads from the genomes you have but that may or may not be useful for what you want to do.