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Where Can I Find These Data?

Folks!

Where can I find public repositories that contain good data for each of the following?

  1. SNP-alleles to gene-expression
  2. gene-expression to protein-levels

Your help would be very much appreciated. Thanks.

-Ato

snp allele gene protein
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updated by Biostar Biostar • written by atoogoe • atoogoe

I've recently become very interested in the correlation between RNA levels and protein activation (indeed, there doesn't seem to be any), and found some evidence for a low correlation (R<0.4) for any given RNA~protein association - but this review looked at 10 studies (4 cell lines, 6 human in-vivo studies) of specific genes. If there is indeed a database on the expected/observed relationship between RNA and protein, that would be a very valuable resource.

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written by Luke • Luke

Hi luke,

Can you provide a link or title of the review you mentioned in your comment? Thanks

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written by atoogoe • atoogoe

Thanks for sharing, Luke.

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written by atoogoe • atoogoe

1 answer

I suppose you refer to eQtl database in point 1), if so this post is a good starting point.

Summary:

1) Pritchard lab at Chicago

2) GTEX at NCBI

3) Genevar

4) SCAN DB

Sorry, but I'm not aware of repository about 2)

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written by ff.cc.cc ff.cc.cc

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