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Determining rs ids from SNP HGV base ID?
written by Katherine •Hello, I’m trying to determine the RS numbers/position for the SNPs from this paper: PMC1510938. The paper uses HGVbase IDs, but I can’t access HGVbase?. …
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
written by spela.salamon •It may seem simple, but I can not seem to find a good way to do this: Provided that I have a known SNP by …
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RS numbers to VCF format -sheep genome
written by marion.ryan •Hello, I would like to retrieve information in VCF format using a list of RS numbers for Sheep genome, easiest solution possible please!! Marion
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chromosome coordinate, rs
written by Ebtihal Kamal •hello every one , I am new in bioinformatics i need to analyze my SNPs by SIFT the required format chromosome coordinates i have rs …
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PLINK --update-name command error due to multiple SNPs with same chr:pos but different rs numbers i…
written by dam4lHi, I have a data file containing autosomal SNPs imputed from the 1000 genomes data. The SNPs in my file are named as chr:pos but …
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Converting SNP from chr:pos to rs number using PLINK?
written by dam4lHi, I have a .txt file with multiple columns, one of which lists SNPs in chr:pos format. Is it possible to convert from chr:pos to …
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Associating mutation effect according to mutation
written by BioalnHello. I have a question regarding dbSNP accession numbers. I'm researching the effect of mutation on protein function and there doesn't seem to be any …
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Is there a ready list of all SNPs in UCSC?
written by m321.k321 •I have list of few thousands snps name (RS*) and want to know their MAF. I used the link http://genome.ucsc.edu/cgi-bin/hgTables But i get errors that …
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Changing Build From 37 To 36 In Snp Data
written by GabrielMontenegro<p>I am working with genome wide SNP data and to use a specific program I need to change the positions of my SNPs from Build …
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Get rs number based on position
written by Zach StednickSimilar to [this question][1], I have a list of SNPs by in `chr:pos` format that I want to check and see if they have an …
Obtaining The Snp Rs Number With The Chromosomal Position