Imputation information score using PLINK

Hi all,

I am trying to apply 3 QC on my data that is MAF, HWE and Imputation information score (threshold 0.1) using PLINK.

I could perform the first 2, but I do not know how I do the third one.

I do not know if it is --proxy-genotypic-concordance or --proxy-impute-threshold or other command because it is not clear to me.

Any suggestion please?

Thanks in advance

Regards

genome

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written 5.5 years ago by ahmed.abdo •

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