convert bam to cram with non-local reference fasta
I have some bam files which I want to convert them to cram. My reference fasta file is not local, but is accessed instead via an https://.... Is there ant way/tool that I can use to make this happen? I just used this:
samtools view -C -T http://www.bc.ca/downloads/genomes/9606/hg38_no_alt/bwa_0.7.6a_ind/genome/hg38_no_alt.fa ./l_samples/sampleA.bam
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