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IPA pathway for DESeq2 result

Hi friends, I want to run pathway analysis with IPA for result of DESeq2 for genes with FDR < 0.05. Which one should I use : log2FoldChange or lfcSE to run the pathway analysis? What are the difference between these two?

gene sequence
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written by Rob • Rob

SE stands for standard error. You don't want that.

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written by swbarnes2 swbarnes2

Thanks swbarnes2. Isn't this shrinkage fold change?

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written by Rob • Rob

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