Extract cNMF cluster membership
Hello all,
my question is relevant to How to extract the result table from NMF clustering (R package 'NMF')? . I still do not understand how consensusmap() assigns each sample to a cluster as shown in consensus track. Manual plotting of maximum values from coef(res) gives me the basis component and not consensus cluster.
Any comment is much appreciated!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
bcftools stats not counting samples
written by alba •
-
DiffBind reports no significant differentially enriched peaks
written by Marco Pannone •
-
Tutorial: Unsupervised clustering on gene expression data
written by Hamid Ghaedi
-
Factor loading values between arrays and principal component 1 in R
written by c.w.govaerts •
-
Adjusting for batch effect and covariates with ComBat
written by juara •
-
RNA-Seq heatmap Scaling Problem
written by Aynur •
-
Obtaining P Values from Cox Regression in R
written by menon_ankita •
-
Tool: Introducing M3C: Monte Carlo reference-based consensus clustering
written by chris86
-
Weights in cnvkit cnr output
written by biologist •
-
R BiomaRt human ensemble_gene_ids
written by biola •
