mauveAligner outputs empty .mauve files and no .alignment files
Hi.
I'm running mauveAligner with 2 genomes from the same species that might belong to 2 different strains. I'm also getting an error message: Clust::SetLeafCount(0).
/mauveAligner --output=genomes1_2.mauve \
--output-alignment=genomes1_2.alignment \
/output/mauve/genome1.fa /output/mauve/genome1.sml \
/output/mauve/genome2.fa /output/mauve/genome2.sml
Any ideas why that's happening?
Thanks.
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