Bioinformatics method to detect nascent RNA from RNA-seq data
Hi all,
I am looking for a bioinformatics tool that is capable to differentiate between spliced and unspliced reads and preferably performs counting of nascent RNAs aligned to different features.
Here no metabolic labeling is performed and it’s just a normal bulk RNA-seq data.
I really appreciate if someone can suggest a tool.
Thanks a lot.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
PCA plot (Suggestions Needed)
written by Aaliya •
-
Bioinformatics method to detect nascent RNA from RNA-seq data
written by Javad
-
pipeline for variant discovery in target resequencing
written by sarastrafella.ss •
-
In need of guidance: RNA-seq analysis
written by jonathanU •
-
How to count different features at the same time with htseq
written by Javad
-
How to count reads mapped to multiple loci?
written by Javad
-
How to extract non-overlapping genes from a a bed file?
written by birdguy.saikat •
-
Job: Bioinformatician (Metagenomics) position in Toulouse, France
written by jiacov
-
Workflow For Using Unified Genotyper For Bioscope Aligned Solid Targeted Capture Sequence
written by Occam
-
Tool: Software For Detecting Differential Abundance In Meta-Genomic Samples
written by Istvan Albert
Hello Javad!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!