How to find sequences of unspliced tRNA genes
Dear community,
I have 2 FASTQ files from 2 samples and I have been working on finding which unspliced tRNAs are present in these 2 files coming from these samples. I am not sure whether an unprocessed tRNA would be visible in a FASTQ file (since I consider that it could be evaluated as an artefact), @swbarnes2 suggested me to obtain sequences of unspliced tRNA genes and do the aligning afterwards.
However, I could find regular tRNA sequences, but I could not see any groups of sequences, specifically belonging to unspliced tRNAs.
Could you suggest me a way to find sequences of unspliced tRNA genes?
Thanks in advance!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
RNA Type Detection
written by kyildizn •
-
How can I remove tRNA, rRNA, snoRNA from the NGS miRNA sample using RFAM
written by khq5801 •
-
What is the advantage of having BAM files per sample compared to one BAM file containing all sample…
written by L_to_the_m •
-
How to obtain unspliced tRNAs from FASTQ file
written by nkabo
-
How to find cell-type specific gene expression signatures
written by nkabo
-
Potential Bacteria Contamination - RNA-Seq
written by VHahaut
-
bcftools not giving all the expected SNPs
written by praneeth.bommisetti •
-
Mapping using multiple reference sequences
written by Juan Ledesma •
-
Extracting number of aminoacid change from variantions in R
written by nkabo
-
NCBI feature table sequence extraction
written by Prasad
Hello nkabo!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!
PS: Please keep it focused in the original thread.
It is simply easier to follow if you add a comment to the original question asking for further help. That keeps it focused in a single thread, thank you!