tissue specific gene list
Hello, I would like to download all expressed gene list for only one tissue type (testis) from GTEX. I am bit confused, what table should I pick (found plenty of datasets in https://gtexportal.org/home/datasets), and what are these gct files.
Thank you for a help!
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Fabio Marroni
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storm1907 •
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storm1907 •
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In the web page of GTEx there's a file described as follows:
Median gene-level TPM by tissue. Median expression was calculated from the file GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz.
I guess it is good for you. You just have to select the right column. The file is this one.
Regarding gtc files, they are defined as follows in GTEx website:
OMNI SNP Array Intensity files (.idat and .gtc)
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Fabio Marroni
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