Sources for DNA accessibility data for certain Orgnisms
Hello. I am looking for dna accessbility data (dnase-seq,atac-seq) for these Orgnisms and cells:
Orgnism Cell
Hamster CHO K1
Tomato tomato protoplasts
Tomato tomato hairy roots
Soybean soybean protoplasts
Soybean soybean hairy roots
Banana Banana protoplasts
Prawn M. rosenbergii ES/HPT
Prawn M. rosenbergii embryos
I tried these sources but most of then have only human data :
- ENCODE
- http://cistrome.org/db/#/
- UCSC
Plant data but not the organisms I need :
Do you know any other sources I can use to look for the data I need?
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have you looked at the species specific resources? I'm not saying they will have the data you are looking for, but it might be. Eg.:
https://www.promusa.org/Global+Musa+Genomics+Consortium
https://banana-genome-hub.southgreen.fr/
(or the southgreen DBs in general?: https://www.southgreen.fr/ )