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Mouse ERV database for RNAseq analysis

Hello All

I am looking for mouse endogenous retroviral (ERV) database for RNAseq analysis. I want to align my fastq file with this database to obtain only those reads that are specific for ERV location. I have found this website Repbase https://www.girinst.org/repbase/update/index.html , however it requires subscription. Does anyone know how to do this? May be some leads? about database and analysis?

Thanks a lot

Prit

rna-seq r alignment sequencing assembly
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written by pb11 • pb11

Thanks. I tried that, its basically fasta file.

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written by pb11 • pb11

You could align your data to this file (not sure what it contains) since that is what you originally wanted to do.

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written by GenoMax GenoMax

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