Paired Tumor and Normal Sample for BRCA-Subtype
I have downloaded the paired tumor and normal sample for BRCA data using TCGAbiolinks. I have referred to the code in this A: Matched Paired Tumour-Normal DEA of BRCA using data downloaded using TCGAbiolink post. However, I want to further divide it to subtypes like LumA, Basal and Triple-Negative keeping the matched Ids. How can I do that?
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You can use tcgabiolinks to look up clinical information: TCGAbiolinks: Clinical data