Hi, I am new to PLINK and I am having trouble using one of the commands. I am trying to perform logistic regression analysis on …

Hello, I am attempting to update the sex information of my cohort vcf data by using PLINK. This is the command I am running: plink …

I'm running the following command with Plink 1.90b6.26: plink --bfile European.imputed.merged.cleanedx --logistic --pheno ../European.pheno.plink.tsv --pheno-name event --covar ../European.pheno.plink.tsv --covar-name age,Sex,PC1,PC2 –-ci 0.95 --out t2d_basic_model.txt where …

I'm trying update my phenotypes and gender. I use the comand line bellow, but appears the error: Error: Failed to open JSB_AX001toAX011_updatepheno. I checked many …

Goodmorning everyone, I'm trying to use plink 1.07 for a linear regression analysis with several COVs. I'm using a ped where i have cases (1) …

Hi all, I'm just starting my very first genotyping QC in plink and am trying to identify sex discordant individuals in my cohort. I tried …

I've encountered a novel error while running association analysis in PLINK. I input the following command: > ./plink --bfile file_merged --pheno phenotype.txt --allow-no-sex > --covar …

Hi, I am new to PLINK and I am having trouble using one of the commands. I am trying to perform logistic regression analysis on …

Hi, I am using plink v 1.9 to convert my ped file to vcf with command: ./plink --ped file.ped --map file.map --recode vcf --out ped_to_vcf …

I am trying to recode alleles for my .bim file in PLINK , for example from A,B allele coding to A,C,G,T. My file ``` 1 …