Silva is excellent, especially with their new license. Another good option (IMO about equal to Silva) is http://rdp.cme.msu.edu/
Downloading 16s rRNA sequence for all bacterial species
Dear all,
I'm trying to create a custom database in Qiime 2, there i need to download the 16s rRNA sequence of all bacterial species in fasta format. can any one suggest me from where i could able to download the 16s rRNA sequence of bacteria in fasta format.
Thanks in advance
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lars.snipen •
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asharuthra •
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asharuthra •
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Mensur Dlakic
The RDP database might be another good choice (http://rdp.cme.msu.edu/misc/resources.jsp).
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Congmin Xu •
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