Searching subreads used to assemble contig of interest (canu)
I use canu to assemble pacbio data. From the contigs.layout.readToTig file, I can find the reads that are used to assemble a particular contig. However, the read ID does not match the original subreads ID. Is there any way to relate the read ID found in contigs.layout.readToTig file to the original subread ID so that I can get those subreads sequences and map back to the assembled contig of interest?
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You'll probably get a good answer on the canu github repo.