Aligning after clustering
Hi there,
I have clustered my sets of genomes and generated over 6000 single fasta files. Now, i intend to align them and construct a phylogenetic tree. Currently Im using Mega7,opening a single file, align them and save into a new extension. Is there an alternative for this step ? Or perhaps my approach in this is just simply wrong ? Please do enlighten me. Thank you
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sadstudent •
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MEGA is not the right program to do entire genome alignments. Look at options mentioned in answers here: How to align 15 different subspecies ?
Thank you for the reply. I did try based on the recommended tools and tutorial. However, I did not get the intended result. Could you possibly explain more on this (procedure-wise) ?