Biostar Test Site

This is site is used for testing only. Visit: https://www.biostars.org to ask a question.

Can vg take MUMmer output as input?
0
0
Entering edit mode
8 months ago
ac2278 ▴ 20

I have a MUMmer delta file. What commands do I run to import this file into vg for genome graph construction and indexing?

vg • 241 views
ADD COMMENT
0
Entering edit mode

Always mention what you've tried and where exactly you run into a problem.

ADD REPLY
0
Entering edit mode

I think what he/she mean is whether we can use the output delta file of MUMmer (the whole-genome alignment of several de novo assemblies) like the Cactus for building the pangenome graph? I have the same question since there is hal2vg script in the cactus website while we do not know how to transfer the output of mummer to vg input. Thanks

ADD REPLY

Login before adding your answer.

Traffic: 156 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6