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How to annotate Missing Positions

Hi :D

I am currently working on two file types that are missing positions of SNPs. ( genos_v2, and genetic_direction). I need to convert them to vcf formats. The VCF files are now missing the POS field. I tried using bcftools/ SnpSift to annotate the missing positions. But it seems that they are not made for that. I am using the reference file here ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/VCF/.

Any help is much appreciated! Thanks!

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written by abdallahamr5 • abdallahamr5

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written by Emily Emily

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