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opening fasta file in python3

Hello members,

I need help w.r.t. opening and reading a fasta file(.fa) in python3, And also to input the same fasta file for fastqc analysis. Having tried some biopython code ( such as from Bio import SeqIO) i keep getting an error message that says invalid syntax. (I am working in Ubuntu OS).

Would be very thankful to receive some help!

fasta file python3 fastqc
• 229 views • link
written by ravi.eshwari • ravi.eshwari

Please share your code, otherwise is impossible to know what are you doing wrong

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written by JC JC

Are you executing your python code in a python script or interpreter, or just in your bash shell?

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written by WouterDeCoster WouterDeCoster

1 answer

Thanks for responding I was able to solve the issue right away Thanks again

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written by ravi.eshwari • ravi.eshwari

Please explain what you missed and how you solved it so your post can be useful to those making a similar mistake in the future.

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written by Ram Ram

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