This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Sequences(Without Ref Genome) For Pathway Analysis?

hi! here is my problem: i have some sequence assembled by trinity ,with raw data and downstream Trinity scripts ,a list of Differencial Expression seqs were collected. i wanna do GO and Kegg analysis with those sequences and i have no idea on how to do it cause there is no reference genome .so can anyone give me some advice or recommand some software to do this? thanks!

pathway go analysis
• 2,310 views • link
written by zhaoqi699 • zhaoqi699

2 answers

try blast2go http://www.blast2go.com/b2ghome

• 0 views • link
written by Nicolas Rosewick Nicolas Rosewick

thanks for your reply,i 've used this software,but but it is too slow to annoted my sequence about 200,000(as background to calculate the Erichment as well as P-value),

• 1 views • link
written by zhaoqi699 • zhaoqi699

Log in to answer this question.

More posts like this