Counting proportion of promoters with polymorphism in Gnomad dataset
I have a bed file of promoters and I want to find out the number of base pairs covered in that file. I know we can use the following if we two bed files:
bedtools intersect -a file1.bed -b file2.bed -wo
But I don't quite understand how to achieve this for just one file.
And then find proportion of promoters with polymorphism in GNOMAD vcf file? How can I do it efficiently?
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Jamie Watson •
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