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Issue with Diffreps

Hello, I am using Diffreps for differential ChIPseq analysis. I keep getting this error which I am unable to fix. The details of the input files and the result files are given below. Any insight is greatly appreciated.

ERROR: median function called for an empty array!

Command: diffReps.pl --treatment hd2b_K9ac.bed --control Col_K9ac.bed --pval 0.05 --mode peak --nsd sharp --meth gt --chrlen TAIR10.sizes.genome.bed --nproc 8 --report diff_rep_Col_K9ac_hd2b_K9ac

**head hd2b_K9ac.bed**
1       0       76      NB501040:259:HHGFMBGXF:2:12209:7824:3953        42      -       76M
1       29      105     NB501040:259:HHGFMBGXF:4:13612:20198:6923       42      +       76M
1       34      110     NB501040:259:HHGFMBGXF:2:21112:20170:13187      42      -       76M
1       36      112     NB501040:259:HHGFMBGXF:4:13610:11015:17275      42      +       76M
1       38      114     NB501040:259:HHGFMBGXF:2:23204:2334:13315       42      +       76M
1       45      121     NB501040:259:HHGFMBGXF:2:12305:24201:18773      42      +       76M
1       48      124     NB501040:259:HHGFMBGXF:2:12312:11041:17999      42      +       76M
1       64      140     NB501040:259:HHGFMBGXF:1:13307:14924:13435      42      +       76M
1       65      141     NB501040:259:HHGFMBGXF:3:23402:11064:11492      42      -       76M
1       71      147     NB501040:259:HHGFMBGXF:4:13610:14215:13849      42      -       76M

head Col_K9ac.bed

1       14      90      NB501040:259:HHGFMBGXF:2:22103:14998:7644       42      -       76M
1       21      97      NB501040:259:HHGFMBGXF:3:13409:2681:8971        42      +       76M
1       23      99      NB501040:259:HHGFMBGXF:2:11112:10561:11936      42      +       76M
1       40      116     NB501040:259:HHGFMBGXF:4:22407:3614:17196       42      +       76M
1       41      117     NB501040:259:HHGFMBGXF:1:13209:20086:16349      42      +       76M
1       63      139     NB501040:259:HHGFMBGXF:2:23204:14388:16745      42      -       76M
1       68      144     NB501040:259:HHGFMBGXF:2:12202:7185:10396       42      -       76M
1       69      145     NB501040:259:HHGFMBGXF:1:11307:21730:16698      42      +       76M
1       73      149     NB501040:259:HHGFMBGXF:4:11508:24118:6667       42      +       76M
1       87      163     NB501040:259:HHGFMBGXF:2:12203:7189:3711        42      -       76M


**Results file:**

# diffReps version: 1.55.3
## Parameter Settings ##
# Treatment files: hd2b.bed
# Control files: Col_K9ac.bed
# Treatment background: None Specified
# Control background: None Specified
# Output file: diff_rep_Col_K9ac_hd2b_K9ac
# Statistical Test: G-test
# Use robust estimation: yes
# Number of deviation cutoff: 20
# Alpha in right-trimmed mean: 0.05
# P-value cutoff: 0.05
# Window size: 1000
# Step size: 100
# Gap size: 0
# Fragment size: 100
# Number of processors used: 8
# Full command used: /opt/share/CPAN/Debian-Buster/ModuleCPAN/bin/diffReps.pl --treatment /K/CHROCYC/Deep-sequencing_Raw_Data/ChIPseq_Rim_hd2b_hda19/test-Rim/sorted_dedupPCR_aboveMAPQ30_trimmed_hd2b_K9ac_Rim_S9_R1_001_bowtie_res.bed --control /K/CHROCYC/Deep-sequencing_Raw_Data/ChIPseq_Rim_hd2b_hda19/test-Rim/sorted_dedupPCR_aboveMAPQ30_trimmed_Col_K9ac_Rim_S5_R1_001_bowtie_res.bed --pval 0.05 --mode peak --nsd sharp --meth gt --chrlen /K/CHROCYC/Rim/tools/TAIR10.sizes.genome_noChr.bed --nproc 8 --report diff_rep__Col_K9ac__hd2b_K9ac
# Split BED files done in 206 seconds.
chip-seq

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